Adult Male/Female Ecl+1day Carcass, Multi mapper

Dm Tissue Expression RNA-seq mixed males and females eclosion + 1 day carcass multiply mapping reads (Celniker project, Celniker subgroup)

Details

Reads sequenced from stranded RNA libraries made from Oregon-R Drosophila melanogaster mixed males and females eclosion + 1 day carcass were aligned to the D. melanogaster r5 genome using TopHat (allowing multiple genomic alignments with up to two mismatches). Tracks show read alignments and density.
Total read count: 114607052
Mapped read count: 106010541
Alignment rate: 92%

General Description

Stranded RNA-seq analysis was performed on poly(A)+ RNA from various tissues dissected from various stages of D. melanogaster. Stranded reads from Illumina GAIIx and HiSeq sequencing were aligned to the D. melanogaster genome using TopHat.

Protocols

  1. Data Analysis: TopHat stranded RNAseq alignment
  1. External Links: SRR070395, SRR070399

Related modENCODE submissions:


Release Date: 2012-02-02