CME W1 cl.8+ (polyA RNA), Multi mapper

D.melanogaster Cell Line Expression unstranded RNA-seq CME_W1_Cl.8+ multiply mapping reads (Celniker project, Celniker subgroup)

Details

Unstranded libraries were created from polyA+ RNA isolated from the D. melanogaster CME W1 Cl.8+ cell line, sequenced using Illumina GAIIx with single and/or paired-end modules, and aligned with TopHat against the r5 genome. Tracks show read alignments and density.
Total read count: 50095520
Mapped read count: 30658518
Alignment rate: 61%

General Description

RNA-seq analysis was performed on poly(A)+ RNA from D. melanogaster cell lines. Reads were sequenced on Illumina GAIIx were aligned to the D. melanogaster r5 genome using TopHat.

Protocols

  1. Data Analysis: TopHat RNAseq alignment
  1. External Links: SRR015074, SRR015076, SRR015078, SRR015080, SRR015082

Related modENCODE submissions:


Release Date: 2012-05-18