CME L1, Multi mapper

Dm Cell Line Expression RNA-seq CME_L1 multiply mapping reads (Celniker project, Celniker subgroup)

Details

Stranded libraries were created from polyA+ RNA isolated from the D. melanogaster CME L1 cell line, sequenced using Illumina GAIIx with single and/or paired-end modules, and aligned with TopHat against the r5 genome. Tracks show read alignments and density.
Total read count: 83576943
Mapped read count: 72434168
Alignment rate: 86%

General Description

RNA-seq analysis was performed on poly(A)+ RNA from D. melanogaster cell lines. Reads were sequenced on Illumina GAIIx were aligned to the D. melanogaster r5 genome using TopHat.

Protocols

  1. Data Analysis: TopHat stranded RNAseq alignment
  1. External Links: SRR070282, SRR070288

Related modENCODE submissions:


Release Date: 2012-01-05