Caffeine Pre Lethal Adults 4day

Dm Treatment Expression RNA-seq Caffeine Treatment_Pre Lethal_Four Day Adults multiply mapping reads (Celniker project, Celniker subgroup)

Details

Reads sequenced from stranded RNA libraries made from Four Day Adults Oregon-R Drosophila melanogaster treated with Caffeine Treatment Pre Lethal were aligned to the D. melanogaster r5 genome using TopHat (allowing multiple genomic alignments with up to two mismatches).
Total read count: 238978260
Mapped read count: 163237732
Alignment rate: 68%

General Description

Stranded RNA-seq analysis was performed on poly(A)+ RNA from D. melanogaster treated with various chemicals through feeding, subjected to temperature shock, or exposure to viruses. Stranded reads from Illumina GAIIx and HiSeq sequencing were aligned to the D. melanogaster genome using TopHat.

Protocols

  1. Data Analysis: TopHat stranded RNAseq alignment
  1. External Links: SRR103747, SRR103748

Related modENCODE submissions:


Release Date: 2012-02-07