CdCl2 0.05mM Late L3 12hr

Dm Treatment Expression RNA-seq Cd Treatment_0.05mM CdCl2_Late Third Instar Larvae_12hr multiply mapping reads (Celniker project, Celniker subgroup)

Details

Reads sequenced from stranded RNA libraries made from Third Instar Larvae Oregon-R Drosophila melanogaster treated with Cd Treatment 0.05mM CdCl2 Late 12hr were aligned to the D. melanogaster r5 genome using TopHat (allowing multiple genomic alignments with up to two mismatches).
Total read count: 169610044
Mapped read count: 158754057
Alignment rate: 93%

General Description

Stranded RNA-seq analysis was performed on poly(A)+ RNA from D. melanogaster treated with various chemicals through feeding, subjected to temperature shock, or exposure to viruses. Stranded reads from Illumina GAIIx and HiSeq sequencing were aligned to the D. melanogaster genome using TopHat.

Protocols

  1. Data Analysis: TopHat stranded RNAseq alignment
  1. External Links: SRR103736, SRR103737

Related modENCODE submissions:


Release Date: 2012-02-07