CdCl2 0.1M Adults 4day

Dm Treatment Expression RNA-seq Cd Treatment 0.1M CdCl2 Four Day Adults multiply mapping reads (Celniker project, Celniker subgroup)

Details

Reads sequenced from stranded RNA libraries made from Four Day Adults Oregon-R Drosophila melanogaster treated with Cd Treatment 0.1M CdCl2 were aligned to the D. melanogaster r5 genome using TopHat (allowing multiple genomic alignments with up to two mismatches).
Total read count: 333884128
Mapped read count: 257212597
Alignment rate: 77%

General Description

Stranded RNA-seq analysis was performed on poly(A)+ RNA from D. melanogaster treated with various chemicals through feeding, subjected to temperature shock, or exposure to viruses. Stranded reads from Illumina GAIIx and HiSeq sequencing were aligned to the D. melanogaster genome using TopHat.

Protocols

  1. Data Analysis: TopHat stranded RNAseq alignment
  1. External Links: SRR103744, SRR103745

Related modENCODE submissions:


Release Date: 2012-04-03