Copper 0.5mM L3

Dm Treatment Expression RNA-seq Cu Treatment_0.5mM Copper_Third Instar Larvae multiply mapping reads (Celniker project, Celniker subgroup)

Details

Reads sequenced from stranded RNA libraries made from Third Instar Larvae Oregon-R Drosophila melanogaster treated with Cu Treatment 0.5mM Copper were aligned to the D. melanogaster r5 genome using TopHat (allowing multiple genomic alignments with up to two mismatches).
Total read count: 100635548
Mapped read count: 41012209
Alignment rate: 40%

General Description

Stranded RNA-seq analysis was performed on poly(A)+ RNA from D. melanogaster treated with various chemicals through feeding, subjected to temperature shock, or exposure to viruses. Stranded reads from Illumina GAIIx and HiSeq sequencing were aligned to the D. melanogaster genome using TopHat.

Protocols

  1. Data Analysis: TopHat stranded RNAseq alignment
  1. External Links: SRR103712, SRR103713

Related modENCODE submissions:


Release Date: 2012-03-08