Embryo time course RNA-seq read density
D.melanogaster SOLiD total RNA-seq (Celniker project, Hoskins & Graveley subgroups)
Tracks show the density of total RNA reads aligned to each nt per strand, for 4-6h embryos.
Strand-specific RNA-seq analysis was performed on 12 total RNA samples in a time course spanning the development of the D. melanogaster embryo, from 0-2hr through 22-24hr in two-hour windows. RNA was isolated by the Peter Cherbas group. Library construction, RNA-seq producution (50 nt reads), data processing and genomic alignment were performed by Applied Biosystems using the SOLID platform and software.
Related modENCODE submissions: