Embryo 10-12h RNA-Seq Multi mapper

Dm Dev Timecourse Expression RNA-seq em10-12hr multiply mapping reads (Celniker project, Celniker subgroup)


Unstranded libraries were created from polyA+ RNA isolated from staged em10-12hr y cn bw sp D. melanogaster flies, sequenced using Illumina GAIIx with single and/or paired-end modules, and aligned with TopHat against the r5 genome. Tracks show read alignments and density.
Total read count: 269404697
Mapped read count: 89729196
Alignment rate: 33%

General Description

RNA-seq analysis was performed on poly(A)+ RNA from 30 developmental stages spanning the life cycle of D. melanogaster, from 0-2hr embryos through 30-day male and female adults. Reads from Illumina GAIIx were aligned to the genome sequence using TopHat.


  1. Data Analysis: TopHat RNAseq alignment
  1. External Links: SRR023604, SRR023644, SRR023694, SRR023727, SRR023831, SRR024010, SRR024221, SRR035396, SRR035397

Related modENCODE submissions:

Release Date: 2012-02-07