Embryo 16-18h RNA-Seq Multi mapper

Dm Dev Timecourse Expression RNA-seq em16-18hr multiply mapping reads (Celniker project, Celniker subgroup)


Unstranded libraries were created from polyA+ RNA isolated from staged em16-18hr y cn bw sp D. melanogaster flies, sequenced using Illumina GAIIx with single and/or paired-end modules, and aligned with TopHat against the r5 genome. Tracks show read alignments and density.
Total read count: 221683952
Mapped read count: 87410583
Alignment rate: 39%

General Description

RNA-seq analysis was performed on poly(A)+ RNA from 30 developmental stages spanning the life cycle of D. melanogaster, from 0-2hr embryos through 30-day male and female adults. Reads from Illumina GAIIx were aligned to the genome sequence using TopHat.


  1. Data Analysis: TopHat RNAseq alignment
  1. External Links: SRR023600, SRR023707, SRR023715, SRR023720, SRR023751, SRR023826, SRR035402

Related modENCODE submissions:

Release Date: 2012-02-07