ML-DmD16-3, Multi mapper

Dm Cell Line Expression RNA-seq ML-DmD16-c3 multiply mapping reads (Celniker project, Celniker subgroup)


Stranded libraries were created from polyA+ RNA isolated from the D. melanogaster ML-DmD16-c3 cell line, sequenced using Illumina GAIIx with single and/or paired-end modules, and aligned with TopHat against the r5 genome. Tracks show read alignments and density.
Total read count: 56009030
Mapped read count: 52054123
Alignment rate: 92%

General Description

RNA-seq analysis was performed on poly(A)+ RNA from D. melanogaster cell lines. Reads were sequenced on Illumina GAIIx were aligned to the D. melanogaster r5 genome using TopHat.


  1. Data Analysis: TopHat stranded RNAseq alignment
  1. External Links: SRR070283, SRR070289

Related modENCODE submissions:

Release Date: 2012-01-11