ML-DmBG3-c2 (polyA RNA), Multi mapper

D.melanogaster Cell Line Expression unstranded RNA-seq ML-DmBG3-c2 multiply mapping reads (Celniker project, Graveley subgroup)

Details

Unstranded libraries were created from polyA+ RNA isolated from the D. melanogaster ML-DmBG3-c2 cell line, sequenced using Illumina GAIIx with single and/or paired-end modules, and aligned with TopHat against the r5 genome. Tracks show read alignments and density.
Total read count: 46974396
Mapped read count: 37813283
Alignment rate: 80%

General Description

RNA-seq analysis was performed on poly(A)+ RNA from D. melanogaster cell lines. Reads were sequenced on Illumina GAIIx were aligned to the D. melanogaster r5 genome using TopHat.

Protocols

  1. Data Analysis: TopHat RNAseq alignment
  1. External Links: SRR015094, SRR015096, SRR015098, SRR015100, SRR015102

Related modENCODE submissions:


Release Date: 2012-05-18