WPP + 3days RNA-Seq Multi mapper

Dm Dev Timecourse Expression RNA-seq WPP_3days multiply mapping reads (Celniker project, Celniker subgroup)

Details

Unstranded libraries were created from polyA+ RNA isolated from staged WPP 3days y cn bw sp D. melanogaster flies, sequenced using Illumina GAIIx with single and/or paired-end modules, and aligned with TopHat against the r5 genome. Tracks show read alignments and density.
Total read count: 292551752
Mapped read count: 97549816
Alignment rate: 33%

General Description

RNA-seq analysis was performed on poly(A)+ RNA from 30 developmental stages spanning the life cycle of D. melanogaster, from 0-2hr embryos through 30-day male and female adults. Reads from Illumina GAIIx were aligned to the genome sequence using TopHat.

Protocols

  1. Data Analysis: TopHat RNAseq alignment
  1. External Links: SRR023738, SRR023744, SRR023748, SRR023783, SRR024216, SRR026430, SRR035218, SRR035391

Related modENCODE submissions:


Release Date: 2012-02-07