WPP 2days CNS, Multi mapper

Dm Tissue Expression RNA-seq Pupae WPP+2d CNS multiply mapping reads (Celniker project, Celniker subgroup)


Reads sequenced from stranded RNA libraries made from Oregon-R Drosophila melanogaster Pupae WPP+2d CNS were aligned to the D. melanogaster r5 genome using TopHat (allowing multiple genomic alignments with up to two mismatches). Tracks show read alignments and density.

General Description

Stranded RNA-seq analysis was performed on poly(A)+ RNA from various tissues dissected from various stages of D. melanogaster. Stranded reads from Illumina GAIIx and HiSeq sequencing were aligned to the D. melanogaster genome using TopHat.


  1. Other Protocols: TopHat stranded RNAseq alignment
  1. External Links: SRR070412, SRR100271

Related modENCODE submissions:

Release Date: 2011-12-21