D20-C2

Dm Cell Line Genomic Sequencing D20-C2 alignments and assembly (Celniker project, Graveley subgroup) Total read count: 53331306
Mapped read count: 51684850
Alignment rate: 96%

General Description

Rather than doing a de novo assembly, we have done a guided assembly for D. melanogaster strains and tissue culture cell lines using the dm3 reference to build a new assembly in which we change the appropriate SNPs and insert or delete sequences as appropriate for indels. Our assembly, then, is full chromosome sequence (e.g., 2R, 2L, etc.) with the changes inserted.

Protocols

  1. Other Protocols: BWA alignment of D. melanogaster genomic reads, Guided Assembly of D. melanogaster Genomes
  1. External Links: SRR497724

Referenced modENCODE submissions:


Release Date: 2012-07-12