non-redundant exons from 14 stages

Non-redundant exon creation from 14 stages (Waterston project)

Details

We aggregated gene models generated from RNA-seq, RTPCR, mass-spec, and confirmed polyA/SL sites from 14 different stages and/or strains to identify the minimum set of non-redundant exons for C. elegans. These were mapped to WS190.

General Description

Using massively parallel sequencing by synthesis methods, we are surveying transcripts from various stages, tissues and conditions of the nematode C. elegans. We use novel statistical approaches to evaluate coverage of annotated features of the genome and of candidate processed transcripts. We then provide lists of evidence of level of expression per transcript and catalogs of confirmed splice junctions, trans-spliced leader sequences, start sites, end sites, and poly-adenylation tracts for each stage/tissue/condition.

Protocols

  1. Other Protocols: Transcript-based non-redundant exon creation

Sample Details

  1. Animals/Lines: Caenorhabditis elegans

Related modENCODE submissions:


Release Date: 2010-02-18