PQM-1 Combined (GFP ChIP)
Identification of Transcription Factor PQM-1::GFP Binding Regions in L3 (Snyder project,Snyder subgroup)
We are identifying the DNA binding sites for 300 transcription factors in C. elegans. Each transcription factor gene is tagged with the same GFP fusion protein, permitting validation of the gene's correct spatio-temporal expression pattern in transgenic animals. Chromatin immunoprecipitation on each strain is peformed using an anti-GFP antibody, and any bound DNA is deep-sequenced using Solexa GA2 technology.
- Growth and isolation: Plated Worm Growth and Harvest
- Sample preparation: Illumina Deep Sequencing, ChIP
- Data Analysis: Illumina Data Merging, Skip Illumina Data Merging, Illumina Data Analysis, Peak Calling
- Antibodies: Anti-eGFP
- Animals/Lines: L3