		C. elegans Genome Browser

C. elegans Genomic Browser: 37 kbp from I:143,000..180,000

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Chromatin Structure

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Histone Modifications and Variants

Nucleosome Structure

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Transcription Factors

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GFP ChIP

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AHA-1 Combined (GFP ChIP) [?] [showing 2/2 subtracks]	FOS-1 Combined (GFP ChIP) [?] [showing 4/4 subtracks]	NHR-28 Combined (GFP ChIP) [?] [showing 4/4 subtracks]
ALR-1 Combined (GFP ChIP) [?]	GEI-11 Combined (GFP ChIP) [?] [showing 6/6 subtracks]	NHR-6 Combined (GFP ChIP) [?]
ALY-2 Combined (GFP ChIP) [?] [showing 3/3 subtracks]	HAM-1 Combined (GFP ChIP) [?] [showing 2/2 subtracks]	NHR-6.v2 Combined (GFP ChIP) [?]
AMA-1 Combined (GFP ChIP) [?]	HLH-1 Combined (GFP ChIP) [?]	NHR-67 Combined (GFP ChIP) [?]
BLMP-1 Combined (GFP ChIP) [?] [showing 2/2 subtracks]	HLH-30 Combined (GFP ChIP) [?] [showing 2/2 subtracks]	NHR-76 Combined (GFP ChIP) [?] [showing 2/2 subtracks]
C01B12.2 Combined (GFP ChIP) [?]	HPL-2 Combined (GFP ChIP) [?] [showing 3/3 subtracks]	NHR-77 Combined (GFP ChIP) [?] [showing 4/4 subtracks]
C16A3.4 Combined (GFP ChIP) [?]	JUN-1 Combined (GFP ChIP) [?] [showing 3/3 subtracks]	PAX-1 Combined (GFP ChIP) [?]
C34F6.9 Combined (GFP ChIP) [?]	LIN-11 Combined (GFP ChIP) [?]	PEB-1 Combined (GFP ChIP) [?]
CEH-14 Combined (GFP ChIP) [?]	LIN-13 Combined (GFP ChIP) [?] [showing 4/4 subtracks]	PES-1 Combined (GFP ChIP) [?]
CEH-16 Combined (GFP ChIP) [?]	LIN-15B Combined (GFP ChIP) [?] [showing 3/3 subtracks]	PHA-4 Combined (GFP ChIP) [?] [showing 8/8 subtracks]
CEH-26 Combined (GFP ChIP) [?]	LIN-35 Combined (GFP ChIP) [?] [showing 5/5 subtracks]	PQM-1 Combined (GFP ChIP) [?]
CEH-28 Combined (GFP ChIP) [?] [showing 2/2 subtracks]	LIN-39 Combined (GFP ChIP) [?] [showing 4/4 subtracks]	R02D3.7 Combined (GFP ChIP) [?] [showing 3/3 subtracks]
CEH-30 Combined (GFP ChIP) [?]	LSY-2 Combined (GFP ChIP) [?] [showing 3/3 subtracks]	SEA-2 Combined (GFP ChIP) [?]
CEH-39 Combined (GFP ChIP) [?]	MAB-5 Combined (GFP ChIP) [?] [showing 3/3 subtracks]	SEM-4 Combined (GFP ChIP) [?]
CES-1 Combined (GFP ChIP) [?] [showing 3/3 subtracks]	MDL-1 Combined (GFP ChIP) [?]	SKN-1 Combined (GFP ChIP) [?] [showing 4/4 subtracks]
DAF-12 Combined (GFP ChIP) [?] [showing 3/3 subtracks]	MED-1 Combined (GFP ChIP)

Core Histones ChIP-Seq [?]	Histone Modifications in H3K18 (ChIP-Seq) [?] [showing 2/2 subtracks]	Histone Modifications in H3K79 (ChIP-Seq) [?] [showing 6/6 subtracks]
Histone Modifications (H3K4) ChIP-Seq [?] [showing 3/3 subtracks]	Histone Modifications in H3K23 (ChIP-Seq) [?] [showing 2/2 subtracks]	Histone Modifications in H3K9 (ChIP-Seq) [?] [showing 13/13 subtracks]
Histone Modifications (H4) ChIP-Seq [?]	Histone Modifications in H3K27 (ChIP-Seq) [?] [showing 9/9 subtracks]	Histone Modifications in H3Ser10 [?]
Histone Modifications in H2AK5 (ChIP-Seq) [?] [showing 2/2 subtracks]	Histone Modifications in H3K36 (ChIP-Seq) [?] [showing 9/9 subtracks]	Histone Modifications in H4K20 (ChIP-Seq) [?] [showing 4/4 subtracks]
Histone Modifications in H3K14 (ChIP-Seq) [?]	Histone Modifications in H3K4 (ChIP-Seq) [?] [showing 6/6 subtracks]	Histone Modifications in H4K8 (ChIP-Seq) [?] [showing 3/3 subtracks]

Core Histones ChIP-chip arrays [?] [showing 7/7 subtracks]	Histone Modifications (H3K4) ChIP-chip arrays [?] [showing 14/14 subtracks]	Histone Modifications (H4) ChIP-chip arrays [?] [showing 9/9 subtracks]
Histone Modifications (H3K27) ChIP-chip arrays [?] [showing 9/9 subtracks]	Histone Modifications (H3K79) ChIP-chip arrays [?] [showing 9/9 subtracks]	Histone Variants ChIP-chip arrays [?]
Histone Modifications (H3K36) ChIP-chip arrays [?] [showing 17/17 subtracks]	Histone Modifications (H3K9) ChIP-chip arrays [?] [showing 11/11 subtracks]

Chromatin fractions extracted with NaCl [?] [showing 3/3 subtracks]	Mononucleosomes [?] [showing 3/3 subtracks]
H3.3 Chromatin fractions extracted with NaCl [?] [showing 3/3 subtracks]	Mononucleosomes 80mM NaCl [?] [showing 2/2 subtracks]

Adult Hermaphrodite 454 alignments [?]	daf-7 Dauer 454 alignments [?]	L2 454 alignments [?]
Adult Male 454 alignments [?]	daf-9 Dauer 454 alignments [?]	L3 454 alignments [?]
daf-11 Dauer 454 alignments [?]	Embryo 454 alignments [?]	L4 454 alignments [?]
daf-2 Dauer 454 alignments [?]	L1 454 alignments [?]

Adult Hermaphrodite seq.pilot [?]	L1 seq.pilot [?]	L3 seq.pilot [?]
Embryo seq.pilot [?]	L2 seq.pilot [?]	L4 seq.pilot [?]

3prime UTRs - CEUP1 [?]	USTs - CEUP1 [?]	UTRome polyA sites [?]
polyA sites - CEUP1 [?]	UTRome 3prime UTRs [?]
RSTs - CEUP1 [?]	UTRome polyA signal sequence [?]

large RACE products -pool A [?]	large RACE products -pool H [?]	small RACE products -pool G [?]
large RACE products -pool B [?]	small RACE products -pool A [?]	small RACE products -pool H [?]
large RACE products -pool C [?]	small RACE products -pool B [?]	small RACE products -pool V1 [?]
large RACE products -pool D [?]	small RACE products -pool C [?]	Utrome minipool 1 [?]
large RACE products -pool E [?]	small RACE products -pool D [?]	Utrome minipool 2 [?]
large RACE products -pool F [?]	small RACE products -pool E [?]
large RACE products -pool G [?]	small RACE products -pool F [?]

pool A [?]	pool D [?]	pool G [?]
pool C [?]	pool F [?]	pool H [?]

eri-1 (mg366) [?]	glp-4 (bn2) [?]	N2 whole worms [?]
fer-1 unfertilized oocytes [?]	him-8 [?]

eri-1 (mg366) [?]	glp-4 (bn2) [?]	N2 embryos [?]
fer-1 unfertilized oocytes	him-8 [?]	N2 mixed stages [?]

	Introns	PolyA	SpliceLeaders
N2.4cell.Embryo	N2 4 cell embryos DSN-Negative-Positive Introns [?]	N2 4 cell embryos DSN-Negative-Positive PolyA sites [?]	N2 4 cell embryos DSN-Negative-Positive SL sites [?]
N2.EarlyEmbryo.Rep.1	N2 Early Embryo Rep.1 Introns [?]	N2 Early Embryo Rep.1 PolyA sites [?]	N2 Early Embryo Rep.1 SL sites [?]
N2.EarlyEmbryo.Rep.2	N2 Early Embryo Rep.2 Introns [?]	N2 Early Embryo Rep.2 PolyA sites [?]	N2 Early Embryo Rep.2 SL sites [?]
N2.EarlyEmbryo.ArrayCaptured	N2 Early Embryo array captured Introns [?]	N2 Early Embryo array captured PolyA sites [?]	N2 Early Embryo array captured SL sites [?]
N2.EarlyEmbryo.0min	N2 Early Embryo (50hrs post L1, +0 min) Introns [?]	N2 Early Embryo (50hrs post L1, +0 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +0 min) SL sites [?]
N2.EarlyEmbryo.30min	N2 Early Embryo (50hrs post L1, +30 min) Introns [?]	N2 Early Embryo (50hrs post L1, +30 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +30 min) SL sites [?]
N2.EarlyEmbryo.60min	N2 Early Embryo (50hrs post L1, +60 min) Introns [?]	N2 Early Embryo (50hrs post L1, +60 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +60 min) SL sites [?]
N2.EarlyEmbryo.90min	N2 Early Embryo (50hrs post L1, +90 min) Introns [?]	N2 Early Embryo (50hrs post L1, +90 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +90 min) SL sites [?]
N2.EarlyEmbryo.120min	N2 Early Embryo (50hrs post L1, +120 min) Introns [?]	N2 Early Embryo (50hrs post L1, +120 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +120 min) SL sites [?]
N2.EarlyEmbryo.150min	N2 Early Embryo (50hrs post L1, +150 min) Introns [?]	N2 Early Embryo (50hrs post L1, +150 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +150 min) SL sites [?]
N2.EarlyEmbryo.180min	N2 Early Embryo (50hrs post L1, +180 min) Introns [?]	N2 Early Embryo (50hrs post L1, +180 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +180 min) SL sites [?]
N2.EarlyEmbryo.210min	N2 Early Embryo (50hrs post L1, +210 min) Introns [?]	N2 Early Embryo (50hrs post L1, +210 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +210 min) SL sites [?]
N2.EarlyEmbryo.240min	N2 Early Embryo (50hrs post L1, +240 min) Introns [?]	N2 Early Embryo (50hrs post L1, +240 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +240 min) SL sites [?]
N2.EarlyEmbryo.270min	N2 Early Embryo (50hrs post L1, +270 min) Introns [?]	N2 Early Embryo (50hrs post L1, +270 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +270 min) SL sites [?]
N2.EarlyEmbryo.300min	N2 Early Embryo (50hrs post L1, +300 min) Introns [?]	N2 Early Embryo (50hrs post L1, +300 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +300 min) SL sites [?]
N2.EarlyEmbryo.330min	N2 Early Embryo (50hrs post L1, +330 min) Introns [?]	N2 Early Embryo (50hrs post L1, +330 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +330 min) SL sites [?]
N2.EarlyEmbryo.360min	N2 Early Embryo (50hrs post L1, +360 min) Introns [?]	N2 Early Embryo (50hrs post L1, +360 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +360 min) SL sites [?]
N2.EarlyEmbryo.420min	N2 Early Embryo (50hrs post L1, +420 min) Introns [?]	N2 Early Embryo (50hrs post L1, +420 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +420 min) SL sites [?]
N2.EarlyEmbryo.450min	N2 Early Embryo (50hrs post L1, +450 min) Introns [?]	N2 Early Embryo (50hrs post L1, +450 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +450 min) SL sites [?]
N2.EarlyEmbryo.480min	N2 Early Embryo (50hrs post L1, +480 min) Introns [?]	N2 Early Embryo (50hrs post L1, +480 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +480 min) SL sites [?]
N2.EarlyEmbryo.510min	N2 Early Embryo (50hrs post L1, +510 min) Introns [?]	N2 Early Embryo (50hrs post L1, +510 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +510 min) SL sites [?]
N2.EarlyEmbryo.540min	N2 Early Embryo (50hrs post L1, +540 min) Introns [?]	N2 Early Embryo (50hrs post L1, +540 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +540 min) SL sites [?]
N2.EarlyEmbryo.570min	N2 Early Embryo (50hrs post L1, +570 min) Introns [?]	N2 Early Embryo (50hrs post L1, +570 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +570 min) SL sites [?]
N2.EarlyEmbryo.600min	N2 Early Embryo (50hrs post L1, +600 min) Introns [?]	N2 Early Embryo (50hrs post L1, +600 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +600 min) SL sites [?]
N2.EarlyEmbryo.630min	N2 Early Embryo (50hrs post L1, +630 min) Introns [?]	N2 Early Embryo (50hrs post L1, +630 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +630 min) SL sites [?]
N2.EarlyEmbryo.660min	N2 Early Embryo (50hrs post L1, +660 min) Introns [?]	N2 Early Embryo (50hrs post L1, +660 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +660 min) SL sites [?]
N2.EarlyEmbryo.690min	N2 Early Embryo (50hrs post L1, +690 min) Introns [?]	N2 Early Embryo (50hrs post L1, +690 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +690 min) SL sites [?]
N2.EarlyEmbryo.720min	N2 Early Embryo (50hrs post L1, +720 min) Introns [?]	N2 Early Embryo (50hrs post L1, +720 min) PolyA sites [?]	N2 Early Embryo (50hrs post L1, +720 min) SL sites [?]
N2.LateEmbryo.Rep.1	N2 Late Embryo Rep.1 Introns [?]	N2 Late Embryo Rep.1 PolyA sites [?]	N2 Late Embryo Rep.1 SL sites [?]
N2.LateEmbryo.Rep.2	N2 Late Embryo Rep.2 Introns	N2 Late Embryo Rep.2 Poly A sites	N2 Late Embryo Rep.2 SL sites
N2.LateEmbryo.ArrayCaptured	N2 Late Embryo array captured Introns	N2 Late Embryo array captured Poly A sites	N2 Late Embryo array captured SL sites
N2.L1.Rep.1	N2 L1 Rep.1 Introns [?]	N2 L1 Rep.1 PolyA sites [?]	N2 L1 Rep.1 SL sites [?]
N2.L1.Rep.2	N2 L1 Rep.2 Introns [?]	N2 L1 Rep.2 Poly A sites [?]	N2 L1 Rep.2 SL sites [?]
N2.L1.Comb.Reps	N2 L1 combined replicates Introns [?]	N2 L1 combined replicates PolyA sites [?]	N2 L1 combined replicates SL sites [?]
N2.L2.Rep.1	N2 L2 Rep.1 Introns [?]	N2 L2 Rep.1 PolyA sites [?]	N2 L2 Rep.1 SL sites [?]
N2.L2.Rep.2	N2 L2 Rep.2 Introns	N2 L2 Rep.2 Poly A sites	N2 L2 Rep.2 SL sites
N2.L2.Comb.Reps	N2 L2 combined replicates Introns [?]	N2 L2 combined replicates PolyA sites [?]	N2 L2 combined replicates SL sites [?]
Dauer.Rep.1	daf-2(e1370) Dauer Rep.1 Introns [?]	daf-2(e1370) Dauer Rep.1 PolyA sites [?]	daf-2(e1370) Dauer Rep.1 SL sites [?]
Dauer.Rep.2	daf-2(e1370) Dauer Rep.2 Introns [?]	daf-2(e1370) Dauer Rep.2 PolyA sites [?]	daf-2(e1370) Dauer Rep.2 SL sites [?]
Dauer.Rep.3	daf-2(e1370) Dauer Rep.3 Introns [?]	daf-2(e1370) Dauer Rep.3 PolyA sites [?]	daf-2(e1370) Dauer Rep.3 SL sites [?]
Dauer.Rep.4	daf-2(e1370) Dauer Rep.4 Introns [?]	daf-2(e1370) Dauer Rep.4 PolyA sites [?]	daf-2(e1370) Dauer Rep.4 SL sites [?]
Dauer.Comb.Reps	daf-2(e1370) Dauer combined replicates [?]	daf-2(e1370) Dauer combined replicates [?]	daf-2(e1370) Dauer combined replicates [?]
DauerEntry.Rep.1	daf-2(e1370) Dauer Entry Rep.1 Introns [?]	daf-2(e1370) Dauer Entry Rep.1 PolyA sites [?]	daf-2(e1370) Dauer Entry Rep.1 SL sites [?]
DauerEntry.Rep.2	daf-2(e1370) Dauer Entry Rep.2 Introns [?]	daf-2(e1370) Dauer Entry Rep.2 PolyA sites [?]	daf-2(e1370) Dauer Entry Rep.2 SL sites [?]
DauerEntry.Rep.3	daf-2(e1370) Dauer Entry Rep.3 Introns [?]	daf-2(e1370) Dauer Entry Rep.3 PolyA sites [?]	daf-2(e1370) Dauer Entry Rep.3 SL sites [?]
DauerEntry.Rep.4	daf-2(e1370) Dauer Entry Rep.4 Introns [?]	daf-2(e1370) Dauer Entry Rep.4 PolyA sites [?]	daf-2(e1370) Dauer Entry Rep.4 SL sites [?]
DauerExit.Rep.1	daf-2(e1370) Dauer Exit Rep.1 Introns [?]	daf-2(e1370) Dauer Exit Rep.1 PolyA sites [?]	daf-2(e1370) Dauer Exit Rep.1 SL sites [?]
DauerExit.Rep.2	daf-2(e1370) Dauer Exit Rep.2 Introns [?]	daf-2(e1370) Dauer Exit Rep.2 PolyA sites [?]	daf-2(e1370) Dauer Exit Rep.2 SL sites [?]
DauerExit.Rep.3	daf-2(e1370) Dauer Exit Rep.3 Introns [?]	daf-2(e1370) Dauer Exit Rep.3 PolyA sites [?]	daf-2(e1370) Dauer Exit Rep.3 SL sites [?]
DauerExit.Rep.4	daf-2(e1370) Dauer Exit Rep.4 Introns [?]	daf-2(e1370) Dauer Exit Rep.4 PolyA sites [?]	daf-2(e1370) Dauer Exit Rep.4 SL sites [?]
N2.L3.Rep.1	N2 L3 Rep.1 Introns [?]	N2 L3 Rep.1 PolyA sites [?]	N2 L3 Rep.1 SL sites [?]
N2.L3.Rep.2	N2 L3 Rep.2 Introns	N2 L3 Rep.2 Poly A sites	N2 L3 Rep.2 SL sites
N2.L3.Comb.Reps	N2 L3 combined replicates Introns [?]	N2 L3 combined replicates PolyA sites [?]	N2 L3 combined replicates SL sites [?]
N2.L4.Rep.1	N2 L4 Rep.1 Introns [?]	N2 L4 Rep.1 PolyA sites [?]	N2 L4 Rep.1 SL sites [?]
N2.L4.Rep.2	N2 L4 Rep.2 Introns [?]	N2 L4 Rep.2 PolyA sites [?]	N2 L4 Rep.2 SL sites [?]
N2.L4.ArrayCaptured	N2 L4 array captured Introns	N2 L4 array captured Poly A sites	N2 L4 array captured SL sites
N2.L4.rRnaRemovedArrayCaptured	N2 L4 rRna removed array captured Introns	N2 L4 rRna removed array captured Poly A sites	N2 L4 rRna removed array captured SL sites
N2.YoungAdult.Rep.1	N2 Young Adult Rep.1 Introns [?]	N2 Young Adult Rep.1 Poly A sites [?]	N2 Young Adult Rep.1 SL sites [?]
N2.YoungAdult.Rep.2	N2 Young Adult Rep.2 Introns [?]	N2 Young Adult Rep.2 Poly A sites [?]	N2 Young Adult Rep.2 SL sites [?]
N2.YoungAdult.Comb.Reps	N2 Young Adult combined replicates Introns [?]	N2 Young Adult combined replicates Poly A sites [?]	N2 Young Adult combined replicates SL sites [?]
N2.YoungAdult.rRnaRemoved.Rep.1	N2 Young Adult rRna removed Rep.1 Introns [?]	N2 Young Adult rRna removed Rep.1 Poly A sites [?]	N2 Young Adult rRna removed Rep.1 SL sites [?]
N2.YoungAdult.rRnaRemoved.Rep.2	N2 Young Adult rRna removed Rep.2 Introns [?]	N2 Young Adult rRna removed Rep.2 Poly A sites [?]	N2 Young Adult rRna removed Rep.2 SL sites [?]
N2.E.faecalis.24hour	N2 E. faecalis 24 hour Introns [?]	N2 E. faecalis 24 hour PolyA sites [?]	N2 E. faecalis 24 hour SL sites [?]
N2.Adult.P.Luminescens.24hour	N2 Adult P. luminescens 24 hour Introns	N2 Adult P. luminescens 24 hour Poly A sites	N2 Adult P. luminescens 24 hour SL sites
N2.Adult.S.Macescens.Db10	N2 Adult S. macescens Db10 Introns [?]	N2 Adult S. macescens Db10 Poly A sites [?]	N2 Adult S. macescens Db10 SL sites [?]
N2.Adult.S.Macescens.Db10.control	N2 Adult S. macescens Db10 E. Coli control Introns	N2 Adult S. macescens Db10 E. Coli control Poly A sites	N2 Adult S. macescens Db10 E. Coli control SL sites
fer-15.L4.H.sphaerosporum	fer-15(b26) L4 H. sphaerosporum Introns [?]	fer-15(b26) L4 H. sphaerosporum PolyA sites [?]	fer-15(b26) L4 H. sphaerosporum SL sites [?]
fer-15.L4.H.sphaerosporum.control	fer-15(b26) L4 H. sphaerosporum E. Coli control Introns [?]	fer-15(b26) L4 H. sphaerosporum E. Coli control PolyA sites [?]	fer-15(b26) L4 H. sphaerosporum E. Coli control SL sites [?]
fer-15.Adult.D.coniospora.5hour	fer-15(b26) Adult D. coniospora 5 hour Introns [?]	fer-15(b26) Adult D. coniospora 5 hour PolyA sites [?]	fer-15(b26) Adult D. coniospora 5 hour SL sites [?]
fer-15.Adult.D.coniospora.12hour	fer-15(b26) Adult D. coniospora 12 hour Introns [?]	fer-15(b26) Adult D. coniospora 12 hour PolyA sites [?]	fer-15(b26) Adult D. coniospora 12 hour SL sites [?]
fer-15.Adult.D.coniospora.control	fer-15(b26) Adult D. coniosporia E. Coli control Introns	fer-15(b26) Adult D. coniosporia E. Coli control Poly A sites	fer-15(b26) Adult D. coniosporia E. Coli control SL sites
fer-15.Adult.Harposporium	fer-15(b26) Adult Harposporium Introns [?]	fer-15(b26) Adult Harposporium PolyA sites [?]	fer-15(b26) Adult Harposporium SL sites [?]
fer-15.Adult.Harposporium.control	fer-15(b26) Adult Harposporium E. Coli control Introns [?]	fer-15(b26) Adult Harposporium E. Coli control PolyA sites [?]	fer-15(b26) Adult Harposporium E. Coli control SL sites [?]
him-8.Embryo.Male.Rep.1	him-8(e1489) Embryo Male Rep.1 Introns [?]	him-8(e1489) Embryo Male Rep.1 PolyA sites [?]	him-8(e1489) Embryo Male Rep.1 SL sites [?]
him-8.Embryo.Male.Rep.2	him-8(e1489) Embryo Male Rep.2 Introns [?]	him-8(e1489) Embryo Male Rep.2 PolyA sites [?]	him-8(e1489) Embryo Male Rep.2 SL sites [?]
him-8.Embryo.Male.Comb.Reps	him-8(e1489) Embryo Male combined replicates Introns [?]	him-8(e1489) Embryo Male combined replicates PolyA sites [?]	him-8(e1489) Embryo Male combined replicates SL sites [?]
him-8.L4.Male.ArrayCaptured	him-8(e1489) L4 Male replicate array captured Introns [?]	him-8(e1489) L4 Male replicate array captured PolyA sites [?]	him-8(e1489) L4 Male replicate array captured SL sites [?]
him-8.L4.Male.Rep.1	him-8(e1489) L4 Male Rep.1 Introns [?]	him-8(e1489) L4 Male Rep.1 PolyA sites [?]	him-8(e1489) L4 Male Rep.1 SL sites [?]
him-8.L4.Male.Rep.2	him-8(e1489) L4 Male Rep.2 Introns [?]	him-8(e1489) L4 Male Rep.2 PolyA sites [?]	him-8(e1489) L4 Male Rep.2 SL sites [?]
him-8.L4.Male.Comb.Reps	him-8(e1489) L4 Male combined replicates Introns [?]	him-8(e1489) L4 Male combined replicates PolyA sites [?]	him-8(e1489) L4 Male combined replicates SL sites [?]
JK1107.L4.Rep.1	JK1107(glp-1(q224)) L4 Rep.1 Introns [?]	JK1107(glp-1(q224)) L4 Rep.1 PolyA sites [?]	JK1107(glp-1(q224)) L4 Rep.1 SL sites [?]
JK1107.L4.Rep.2	JK1107(glp-1(q224)) L4 Rep.2 Introns [?]	JK1107(glp-1(q224)) L4 Rep.2 PolyA sites [?]	JK1107(glp-1(q224)) L4 Rep.2 SL sites [?]
JK1107.L4.Comb.Reps	JK1107(glp-1(q224)) L4 combined replicates Introns [?]	JK1107(glp-1(q224)) L4 combined replicates PolyA sites [?]	JK1107(glp-1(q224)) L4 combined replicates SL sites [?]
lin-35.L1	lin-35(n745) L1 Introns [?]	lin-35(n745) L1 PolyA sites [?]	lin-35(n745) L1 SL sites [?]
lin-35.L1.ArrayCaptured	lin-35(n745) L1 array captured Introns [?]		lin-35(n745) L1 array captured SL sites [?]
PharyngealMuscles.OK0640	Pharyngeal Muscles (OK0640) Introns [?]	Pharyngeal Muscles (OK0640) Poly A sites [?]	Pharyngeal Muscles (OK0640) SL sites [?]
spe-9.YoungAdult	spe-9(hc88) Young Adult Introns [?]	spe-9(hc88) Young Adult PolyA sites [?]	spe-9(hc88) Young Adult SL sites [?]

Adult spe-9 (colored by exon)	male mid-L4 dpy28 him-8 25dC 30hrs (colored by mRNA)	mid-L4 (colored by exon)
Adult spe-9 (colored by mRNA)	mid-L1 (colored by exon)	mid-L4 (colored by mRNA)
early embryo (colored by exon)	mid-L1 (colored by mRNA)	RNAseq Aggregate fourteen stages (colored by exon)
early embryo (colored by mRNA)	mid-L1 lin-35 (colored by exon)	RNAseq Aggregate fourteen stages (colored by mRNA)
embryo him-8 (colored by exon)	mid-L1 lin-35 (colored by mRNA)	RNAseq Aggregate nineteen stages (colored by exon)
embryo him-8 (colored by mRNA)	mid-L2 (colored by exon)	RNAseq Aggregate nineteen stages (colored by mRNA)
late embryo (colored by exon)	mid-L2 (colored by mRNA)	Young Adult (colored by exon)
late embryo (colored my mRNA)	mid-L3 (colored by exon)	Young Adult (colored by mRNA)
male mid-L4 dpy28 him-8 25dC 30hrs (colored by exon)	mid-L3 (colored by mRNA)

Adult spe-9 confirmed introns [?]	mid-L1 confirmed introns [?]	RNAseq Aggregate fourteen stages confirmed introns [?]
early embryo confirmed introns [?]	mid-L1 lin-35 confirmed introns [?]	RNAseq Aggregate nineteen stages confirmed introns [?]
embryo him-8 confirmed introns [?]	mid-L2 confirmed introns [?]	Young Adult confirmed introns [?]
late embryo confirmed introns [?]	mid-L3 confirmed introns [?]
male mid-L4 dpy28 him-8 25dC 30hrs confirmed introns [?]	mid-L4 confirmed introns [?]

Adult spe-9 confirmed polyA [?]	mid-L1 confirmed polyA [?]	RNAseq Aggregate fourteen stages confirmed polyA [?]
early embryo confirmed polyA [?]	mid-L1 lin-35 confirmed polyA [?]	RNAseq Aggregate nineteen stages confirmed polyA [?]
embryo him-8 confirmed polyA [?]	mid-L2 confirmed polyA [?]	Young Adult confirmed polyA [?]
late embryo confirmed polyA [?]	mid-L3 confirmed polyA [?]
male mid-L4 dpy28 him-8 25dC 30hrs confirmed polyA [?]	mid-L4 confirmed polyA [?]

Adult spe-9 confirmed SLs [?]	mid-L1 confirmed SLs [?]	RNAseq Aggregate fourteen stages confirmed SLs [?]
early embryo confirmed SLs [?]	mid-L1 lin-35 confirmed SLs [?]	RNAseq Aggregate nineteen stages confirmed SLs [?]
embryo him-8 confirmed SLs [?]	mid-L2 confirmed SLs [?]	Young Adult confirmed SLs [?]
late embryo confirmed SLs [?]	mid-L3 confirmed SLs [?]
male mid-L4 dpy28 him-8 25dC 30hrs confirmed SLs [?]	mid-L4 confirmed SLs [?]

Green Lab confirmed introns (all) [?] [showing 7/7 subtracks]	Green Lab confirmed introns 2010-01-26 set 5 [?]	Green Lab ESTs 2008-12-02 set 4 [?]
Green Lab confirmed introns 2008-12-02 set 1 [?]	Green Lab confirmed introns 2011-03-24 Genelet Gap Closing [?]	Green Lab ESTs 2009-09-21 Chromosome II [?]
Green Lab confirmed introns 2008-12-02 set 2 [?]	Green Lab ESTs (all) [?] [showing 10/10 subtracks]	Green Lab ESTs 2010-01-26 Chromosome I [?]
Green Lab confirmed introns 2008-12-02 set 3 [?]	Green Lab ESTs 2008-12-02 set 1 [?]	Green Lab ESTs 2011-03-24 Genelet Gap Closing [?]
Green Lab confirmed introns 2008-12-02 set 4 [?]	Green Lab ESTs 2008-12-02 set 2 [?]
Green Lab confirmed introns 2009-09-21 Chromosome II [?]	Green Lab ESTs 2008-12-02 set 3 [?]

Green Lab confirmed SL acceptor sites Set 1 [?]	Green Lab ESTs SL Set 1 [?]
Green Lab confirmed SL acceptor sites Set 2 [?]	Green Lab ESTs SL Set 2 [?]

Adult spe-9 Day 0 miRNA expression change [?]	L1 arrest miRNA expression change [?]	PA14 WT miRNA expression change [?]
Adult spe-9 Day 12 miRNA expression change [?]	mid-L1 miRNA expression change [?]	Young Adult Day 1 Control miRNA expression change [?]
Adult spe-9 Day 5 miRNA expression change [?]	mid-L2 miRNA expression change [?]	Young Adult male dpy-5;him-8 miRNA expression change [?]
Adult spe-9 Day 8 miRNA expression change	mid-L3 miRNA expression change [?]	Young Adult miRNA expression change [?]
Embryo miRNA expression change [?]	mid-L4 miRNA expression change [?]

Adult spe-9 12hr Untreated control miRNA expression [?]	Adult spe-9 Heat shock miRNA expression change [?]	Adult spe-9 Oxidation miRNA expression change [?]
Adult spe-9 6 hr Untreated control miRNA expression change [?]	Adult spe-9 Heat shock recovery miRNA expression change [?]	Adult spe-9 Starvation miRNA expression change [?]
Adult spe-9 Baseline miRNA expression change [?]	Adult spe-9 Hypoxia miRNA expression change [?]	N2 Heat shock stress miRNA annotation [?]

Adult Harposporium control exp. OP50 2-24hrs (colored by exon)	dauer exit daf-2 25dC 91hrs 15dC 12hrs Genelets (colored by exon)	mid-L1 lin-35 Genelets (colored by exon)
Adult Harposporium control exp. OP50 2-24hrs (colored by mRNA)	dauer exit daf-2 25dC 91hrs 15dC 12hrs Genelets (colored by mRNA)	mid-L1 lin-35 Genelets (colored by mRNA)
Adult Harposporium exp. 2-24hrs (colored by exon)	early embryo Genelets (colored by exon)	mid-L2 Genelets (colored by exon)
Adult Harposporium exp. 2-24hrs (colored by mRNA)	early embryo Genelets (colored by mRNA)	mid-L2 Genelets (colored by mRNA)
Adult S.macescens control exp. OP50 1-24hrs (colored by exon)	embryo him-8 Genelets (colored by exon)	mid-L3 Genelets (colored by exon)
Adult S.macescens control exp. OP50 1-24hrs (colored by mRNA)	embryo him-8 Genelets (colored by mRNA)	mid-L3 Genelets (colored by mRNA)
Adult S.macescens Db10 exp. 1-24hrs (colored by exon)	L4 soma no DNAse I (colored by exon)	mid-L4 Genelets (colored by exon)
Adult S.macescens Db10 exp. 1-24hrs (colored by mRNA)	L4 soma no DNAse I (colored by mRNA)	mid-L4 Genelets (colored by mRNA)
Adult spe-9 Genelets (colored by exon)	late embryo Genelets (colored by exon)	RNAseq Aggregate fourteen stages (colored by exon)
Adult spe-9 Genelets (colored by mRNA)	late embryo Genelets (colored my mRNA)	RNAseq Aggregate fourteen stages (colored by RNA)
dauer daf-2 25dC 91hrs Genelets (colored by exon)	male mid-L4 dpy28 him-8 25dC 30hrs Genelets (colored by exon)	Young Adult Genelets (colored by exon)
dauer daf-2 25dC 91hrs Genelets (colored by mRNA)	male mid-L4 dpy28 him-8 25dC 30hrs Genelets (colored by mRNA)	Young Adult Genelets (colored by mRNA)
dauer entry daf-2 25dC 48hrs Genelets (colored by exon)	mid-L1 Genelets (colored by exon)
dauer entry daf-2 25dC 48hrs Genelets (colored by mRNA)	mid-L1 Genelets (colored by mRNA)

Adult Harposporium control exp. OP50 2-24hrs confirmed introns [?]	dauer exit daf-2 25dC 91hrs 15dC 12hrs confirmed introns [?]	mid-L1 lin-35 confirmed introns [?]
Adult Harposporium exp. 2-24hrs confirmed introns [?]	early embryo confirmed introns [?]	mid-L2 confirmed introns [?]
Adult S.macescens control exp. OP50 1-24hrs confirmed introns [?]	embryo him-8 confirmed introns [?]	mid-L3 confirmed introns [?]
Adult S.macescens Db10 exp. 1-24hrs confirmed introns [?]	L4 soma no DNAse I confirmed introns [?]	mid-L4 confirmed introns [?]
Adult spe-9 confirmed introns [?]	late embryo confirmed introns [?]	RNAseq Aggregate fourteen stages confirmed introns [?]
dauer daf-2 25dC 91hrs confirmed introns [?]	male mid-L4 dpy28 him-8 25dC 30hrs confirmed introns [?]	Young Adult confirmed introns [?]
dauer entry daf-2 25dC 48hrs confirmed introns [?]	mid-L1 confirmed introns [?]

Adult spe-9 [?]	early embryo 50-660 [?]	late embryo cap6 [?]
AdultSPE9 [?]	early embryo 50-690 [?]	late embryo rep1 [?]
dauer daf-2 combined replicates [?]	early embryo 50-720 [?]	late embryo rep2 [?]
dauer entry daf-2 combined replicates [?]	early embryo 50-90 [?]	LE [?]
dauer exit daf-2 rep1 [?]	early embryo cap5 [?]	LIN35 [?]
dauer exit daf-2 rep3 [?]	early embryo rep1 [?]	male mid-L4 dpy28 him-8 25dC 30hrs [?]
dauer exit daf-2 rep4 [?]	early embryo rep2 [?]	male mid-L4 him-8 array capture [?]
DauerDAF2 [?]	EE [?]	mid-L1 lin-35 25dC 40hr [?]
DauerEntryDAF2 [?]	embryo (4 cells) treated with DSN (positive and negative) [?]	mid-L1 lin-35 array capture [?]
DauerExitDAF2 [?]	embryo him-8 20dC [?]	mid-L2 25dC 14 hrs [?]
early embryo 50-0 [?]	embryo him-8 rep1 [?]	mid-L3 25dC 25hrs [?]
early embryo 50-120 [?]	embryo him-8 rep2 [?]	mid-L4 25dC 36hrs [?]
early embryo 50-120 (initial reads) [?]	EmMalesHIM8 [?]	mid-L4 cap4 [?]
early embryo 50-150 [?]	L1 [?]	N2-EEcap5 [?]
early embryo 50-180 [?]	L1 replicate 1 [?]	N2_4cell_EE_DSN-Negative-Positive [?]
early embryo 50-210 [?]	L1 replicate 2 [?]	N2_4cell_EE_RZ-56 [?]
early embryo 50-240 [?]	L2 [?]	N2_EE_DSN-51 [?]
early embryo 50-270 [?]	L2 replicate 1 [?]	N2_EE_RZ-54 [?]
early embryo 50-30 [?]	L3 [?]	N2_L2_DSN-50 [?]
early embryo 50-300 [?]	L3 replicate 2 [?]	N2_L2_RZ-53 [?]
early embryo 50-330 [?]	L4 [?]	N2_L4cap4 [?]
early embryo 50-360 [?]	L4 array captured [?]	N2_LE-2cap6 [?]
early embryo 50-390 [?]	L4 JK1107 soma replicate 1 [?]	N2_YA_RZ-1 [?]
early embryo 50-420 [?]	L4 JK1107 soma replicate 2 [?]	N2_Yad-1RR [?]
early embryo 50-450 [?]	L4 male replicate 1 [?]	YA [?]
early embryo 50-480 [?]	L4 male replicate 2 [?]	Young Adult 1RR [?]
early embryo 50-510 [?]	L4 replicate 2 [?]	Young Adult 25dC 46hrs [?]
early embryo 50-540 [?]	L4 rRNA depleted array capture [?]	Young Adult combined replicates [?]
early embryo 50-570 [?]	L4 soma no DNAse I [?]	Young Adult rep1 [?]
early embryo 50-60	L4MALE [?]	Young Adult rep2 [?]
early embryo 50-600 [?]	L4MALE6cap2	Young Adult rRNA depleted [?]
early embryo 50-630 [?]	late embryo 20dC 45hrs [?]

Adult D.coniospora OP50 control [?]	Adult fer-15 H.sphaerosporum exp [?]	Adult P.luminescens 24hr exp [?]
Adult E.faecalis 24hr exp [?]	Adult fer-15 H.sphaerosporum OP50 control [?]	Adult S.macescens Db10 [?]
Adult fer-15 D.coniospora 12hr exp [?]	Adult fer-15 Harposporium exp [?]	Adult S.macescens Db10 OP50 control [?]
Adult fer-15 D.coniospora 5hr exp [?]	Adult fer-15 Harposporium OP50 control [?]

Adult spe-9 Day 0 [?]	embryo N2 hermaphrodite [?]	L4 N2 hermaphrodite [?]
Adult spe-9 Day 12 [?]	L1 N2 hermaphrodite [?]	Young Adult dpy-28 him-8 male [?]
Adult spe-9 Day 5 [?]	L2 N2 hermaphrodite [?]	Young Adult N2 hermaphrodite [?]
Adult spe-9 Day 8 [?]	L3 N2 hermaphrodite [?]

N2 Heatshock 32C-6hr 1 day post-L4 sncRNA [?]	spe-9 Heatshock 32C-6hr 1 day post-L4 sncRNA [?]	spe-9 Starvation 12hr sncRNA [?]
N2 L1 arrest sncRNA [?]	spe-9 Heatshock Recovery sncRNA [?]	spe-9 Untreated Control 0hr (Baseline) sncRNA [?]
N2 Untreated Control 1 day post-L4 sncRNA [?]	spe-9 Hypoxia Treatment sncRNA [?]	spe-9 Untreated Control 6hr sncRNA [?]
PA14 12-hr Treatment 1 day post-L4 sncRNA [?]	spe-9 Oxidation Treatment sncRNA [?]	spe-9 Untreated Control Recovery 12hr sncRNA [?]